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Lynnon corporation danman software
Danman Software, supplied by Lynnon corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/danman+software/danman+software/pm40234726-56-9-13
Average 90 stars, based on 1 article reviews
danman software - by Bioz Stars, 2026-10
90/100 stars

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Software:

Article Title: Aggregation of Mouse Serum Amyloid A Protein Was Promoted by Amyloid-Enhancing Factors with the More Genetically Homologous Serum Amyloid A
Article Snippet: .. DANMAN software (Lynnon Biosoft, San Ramon, CA, USA) was used to analyze the homology of these SAA protein sequences and to establish a homology evolution tree by protein multiple sequence alignment. ..

Article Title: Effects of cell morphology, physiology, biochemistry and CHS genes on four flower colors of Impatiens uliginosa
Article Snippet: .. Alignment of the sequences amino acids of IuCHS was carried out using the ClustalW algorithm in DANMAN software (LynnonBiosoft, USA) , and a phylogenetic tree was constructed with the CHS protein sequences of the other species and IuCHS using the neighbor-joining method in MEGA11 software , with 1000 bootstrap replicates and the other parameters set to default ( ). ..

Article Title: Two predominant MUPs, OBP3 and MUP13, are male pheromones in rats.
Article Snippet: .. The pIs of the identified proteins were calculated using ExPASy-Compute pI/Mw (https://web. expasy.org/compute_pi/), and DANMAN software (version 6.0, Lynnon Biosoft, USA) was used to align the protein sequences. .. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE [69] partner repository with the dataset identifier PXD008341. qRT-PCR The TRIzol method (Life Technologies, USA) was used to extract the total RNA from the rat liver, and the PrimeScript® RT reagent Kit with a gDNA Eraser (Takara Bio, Japan) was employed to reverse-transcribe cDNAs, according to the manufacturer’s instructions.

Article Title: Two predominant MUPs, OBP3 and MUP13, are male pheromones in rats
Article Snippet: .. The pIs of the identified proteins were calculated using ExPASy-Compute pI/Mw ( https://web.expasy.org/compute_pi/ ), and DANMAN software (version 6.0, Lynnon Biosoft, USA) was used to align the protein sequences. .. The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE [ ] partner repository with the dataset identifier PXD008341.

Article Title: Transcriptomics Integrated with Metabolomics Unveil Carotenoids Accumulation and Correlated Gene Regulation in White and Yellow-Fleshed Turnip ( Brassica rapa ssp. rapa )
Article Snippet: .. The recombinant plasmids were sequenced by Sunny Biotechnology Co. Ltd. (Shanghai, China) and sequence alignment was performed with DANMAN software (Lynnon BioSoft, San Ramon, CA, USA). ..

Article Title: A Wheat WRKY Transcription Factor TaWRKY46 Enhances Tolerance to Osmotic Stress in transgenic Arabidopsis Plants
Article Snippet: .. Multiple sequence alignment was performed by DANMAN software (Lynnon Biosoft, San Ramon, California, USA). ..

Article Title: Bioinformatic analysis of c-Myc target from laryngeal cancer cell gene of laryngeal cancer.
Article Snippet: .. Amino acid sequence of the gene was obtained through DANMAN software (Lynnon Biosoft Co., USA); physicochemical properties such as the amino acid composition, molecular weight, and isoelectric point of MTLC gene were analyzed using the ORF online software (National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA) of NCBI, which combined with Prot Parma online study in Expasy website; the hydrophobicity and transmembrane region were analyzed, respectively, by ProtScale system (The SIB Swiss Institute of Bioinformatics, Swiss) and TMHMM Server V.2.0 system (Technical University of Denmark, Denmark); signal peptide of protein‐encoding were analyzed by SingnalP4.1server (Technical University of Denmark, Denmark); sub‐cells were localized by ProtComp v. 9.0; Hopfield neural net was used to make secondary structure prediction; Functions of proteins were predicted by Protfun software (Technical University of Denmark, Denmark). ..

Article Title: Fusarium citri as an entomopathogenic fungus mediating plant resistance against insect pests and phytopathogens.
Article Snippet: Sequencing of the PCR products was conducted by Sangon Biotech Ltd. (Shanghai, China). .. The forward and reverse sequences obtained were aligned with DANMAN software version 6.0.3.99 (Lynnon Biosoft, San Ramon, CA, USA). ..

Sequencing:

Article Title: Aggregation of Mouse Serum Amyloid A Protein Was Promoted by Amyloid-Enhancing Factors with the More Genetically Homologous Serum Amyloid A
Article Snippet: .. DANMAN software (Lynnon Biosoft, San Ramon, CA, USA) was used to analyze the homology of these SAA protein sequences and to establish a homology evolution tree by protein multiple sequence alignment. ..

Article Title: Transcriptomics Integrated with Metabolomics Unveil Carotenoids Accumulation and Correlated Gene Regulation in White and Yellow-Fleshed Turnip ( Brassica rapa ssp. rapa )
Article Snippet: .. The recombinant plasmids were sequenced by Sunny Biotechnology Co. Ltd. (Shanghai, China) and sequence alignment was performed with DANMAN software (Lynnon BioSoft, San Ramon, CA, USA). ..

Article Title: A Wheat WRKY Transcription Factor TaWRKY46 Enhances Tolerance to Osmotic Stress in transgenic Arabidopsis Plants
Article Snippet: .. Multiple sequence alignment was performed by DANMAN software (Lynnon Biosoft, San Ramon, California, USA). ..

Article Title: Bioinformatic analysis of c-Myc target from laryngeal cancer cell gene of laryngeal cancer.
Article Snippet: .. Amino acid sequence of the gene was obtained through DANMAN software (Lynnon Biosoft Co., USA); physicochemical properties such as the amino acid composition, molecular weight, and isoelectric point of MTLC gene were analyzed using the ORF online software (National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA) of NCBI, which combined with Prot Parma online study in Expasy website; the hydrophobicity and transmembrane region were analyzed, respectively, by ProtScale system (The SIB Swiss Institute of Bioinformatics, Swiss) and TMHMM Server V.2.0 system (Technical University of Denmark, Denmark); signal peptide of protein‐encoding were analyzed by SingnalP4.1server (Technical University of Denmark, Denmark); sub‐cells were localized by ProtComp v. 9.0; Hopfield neural net was used to make secondary structure prediction; Functions of proteins were predicted by Protfun software (Technical University of Denmark, Denmark). ..

Construct:

Article Title: Effects of cell morphology, physiology, biochemistry and CHS genes on four flower colors of Impatiens uliginosa
Article Snippet: .. Alignment of the sequences amino acids of IuCHS was carried out using the ClustalW algorithm in DANMAN software (LynnonBiosoft, USA) , and a phylogenetic tree was constructed with the CHS protein sequences of the other species and IuCHS using the neighbor-joining method in MEGA11 software , with 1000 bootstrap replicates and the other parameters set to default ( ). ..

Recombinant:

Article Title: Transcriptomics Integrated with Metabolomics Unveil Carotenoids Accumulation and Correlated Gene Regulation in White and Yellow-Fleshed Turnip ( Brassica rapa ssp. rapa )
Article Snippet: .. The recombinant plasmids were sequenced by Sunny Biotechnology Co. Ltd. (Shanghai, China) and sequence alignment was performed with DANMAN software (Lynnon BioSoft, San Ramon, CA, USA). ..

Molecular Weight:

Article Title: Bioinformatic analysis of c-Myc target from laryngeal cancer cell gene of laryngeal cancer.
Article Snippet: .. Amino acid sequence of the gene was obtained through DANMAN software (Lynnon Biosoft Co., USA); physicochemical properties such as the amino acid composition, molecular weight, and isoelectric point of MTLC gene were analyzed using the ORF online software (National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA) of NCBI, which combined with Prot Parma online study in Expasy website; the hydrophobicity and transmembrane region were analyzed, respectively, by ProtScale system (The SIB Swiss Institute of Bioinformatics, Swiss) and TMHMM Server V.2.0 system (Technical University of Denmark, Denmark); signal peptide of protein‐encoding were analyzed by SingnalP4.1server (Technical University of Denmark, Denmark); sub‐cells were localized by ProtComp v. 9.0; Hopfield neural net was used to make secondary structure prediction; Functions of proteins were predicted by Protfun software (Technical University of Denmark, Denmark). ..



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